GenLib.jl
Tools for pedigree analysis.
A pure Julia port of R's GENLIB genetics and genealogical library.
Package Features
- Basic functions that use the same syntax as R's GENLIB, sometimes faster than the original implementations;
- A function that computes the most recent common ancestors several magnitudes faster than
gen.findMRCA
in R's GENLIB; - The fastest available implementation to compute pairwise kinship coefficients, based on the algorithm by Karigl, 1981;
- The fastest available implementation to compute a square matrix of kinship coefficients, based on the algorithms by Karigl, 1981 and Kirkpatrick et al., 2019.
The Tutorials explain how to get started using GenLib.
See the Index for the complete list of documented functions and types.
The Bibliography lists the sources used for implementing the algorithms.
Index
GenLib.genea140
GenLib.geneaJi
GenLib.pop140
GenLib.GenMatrix
GenLib.Individual
GenLib.Pedigree
GenLib.ancestor
GenLib.branching
GenLib.children
GenLib.completeness
GenLib.depth
GenLib.f
GenLib.findDistance
GenLib.findFounders
GenLib.findMRCA
GenLib.founder
GenLib.gc
GenLib.genealogy
GenLib.genout
GenLib.noind
GenLib.nomen
GenLib.nowomen
GenLib.occ
GenLib.phi
GenLib.phiMean
GenLib.pro
GenLib.rec
GenLib.sibship